BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026A01SP1|AL428471
(859 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1189 819 0.0
3x_Contig1122 410 e-114
>3x_Contig1189
Length = 5010
Score = 819 bits (409), Expect = 0.0
Identities = 420/425 (98%), Gaps = 1/425 (0%)
Strand = Plus / Minus
Query: 1 gatctgagaagaaacttggcccggagagctttgattctcagctgaaggcaggcgtttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gatctgagaagaaacttggcccggagagctttgattctcagctgaaggcaggcgtttctg 374
Query: 61 ctccaaaaatgtataaagctctggatagactcctgaatgaatggactaactatggtttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctccaaaaatgtataaagctctggatagactcctgaatgaatggactaactatggtttga 314
Query: 121 agcatgttgaatcaagccctaatgattttgtcatttctggtaagctgaccagtgacaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agcatgttgaatcaagccctaatgattttgtcatttctggtaagctgaccagtgacaaca 254
Query: 181 tcttatctttaagatccactggattcaagattactgttctgcctggtgaaggaaatggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcttatctttaagatccactggattcaagattactgttctgcctggtgaaggaaatggat 194
Query: 241 caataatacagttcaccaagaaatcaggatctacaaagacttttaatagactagtaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caataatacagttcaccaagaaatcaggatctacaaagacttttaatagactagtaaagg 134
Query: 301 agatcgaaaaaattttagagaaggaaaaggkgctagtattctctttctgatttaattttg 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 133 agatcgaaaaaattttagagaaggaaaaggtgctagtattctctttctgatttaattttg 74
Query: 361 tcggcctttaaaatgcacaagtatatatrgactcataaatgtkgtattattgarttattt 420
||||||||| |||||||||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct: 73 tcggccttt-aaatgcacaagtatatatagactcataaatgttgtattattgaattattt 15
Query: 421 agttg 425
|||||
Sbjct: 14 agttg 10
>3x_Contig1122
Length = 4483
Score = 410 bits (205), Expect = e-114
Identities = 216/221 (97%), Gaps = 1/221 (0%)
Strand = Plus / Plus
Query: 640 cagtatcttactatgagcagcttccttgattctyttcgcgatttctctcggaggtaaaaa 699
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 17 cagtatcttactatgagcagcttccttgattcttttcgcgatttctctcggaggtaaaaa 76
Query: 700 gtttggrtggtcccagccatattctttagagttcaagcctccactacagacatcaataac 759
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gtttggatggtcccagccatattctttagagttcaagcctccactacagacatcaataac 136
Query: 760 atctaccccatgctgtactaaaaatggkaataaccgaatggtgtcattgagttt-cmccc 818
||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct: 137 atctaccccatgctgtactaaaaatggtaataaccgaatggtgtcattgagtttccaccc 196
Query: 819 gtctgggtcttcaacgttttcatctgcacaaagtctcaaga 859
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtctgggtcttcaacgttttcatctgcacaaagtctcaaga 237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5357
Number of Sequences: 1807
Number of extensions: 5357
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 859
length of database: 10,358,551
effective HSP length: 16
effective length of query: 843
effective length of database: 10,329,639
effective search space: 8707885677
effective search space used: 8707885677
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.6 bits)